SURGICAL SITE INFECTIONS: PREVALENCE, ASSOCIATED FACTORS AND ANTIMICROBIAL SUSCEPTIBILITY PATTERNS OF THE BACTERIAL ISOLATES AMONG POSTOPERATIVE PATIENTS IN SANA’A, YEMEN
Yahya Abdullah Ahmed Alhadi1, Taghreed Ahmed M Al-Kibsi1, Hassan Abdulwahab Al-Shamahy2,3, Yusra Ahmed Ali Sharf Aldeen2
1Department of Oral and Maxillo-Facial Surgery, Faculty of Dentistry, Sana’a University, Republic of Yemen.
2Department of Basic Sciences, Faculty of Dentistry, Sana’a University, Republic of Yemen.
3Medical Microbiology department, Faculty of Medicine, Genius University for Sciences & Technology, Dhamar city, Republic of Yemen.
Background: Surgical site infections (SSIs) are infections that occur one month after a surgical operation or one year after implant surgery and a surgical procedure, either at the injury site or near the injury site. Despite SSIs are still a major problem causing increased morbidity and mortality globally, especially in developing countries, there is a dearth of information in Yemen.
Objective: This study was aimed to assess the prevalence of SSIs, associated factors and antimicrobial susceptibility patterns of the bacterial isolates among post-operative patients in public and private hospitals in Sana’a, Yemen.
Methods: This is a cross-sectional study carried out on 309 postoperative patients, aged one year and over that underwent surgery in selected public and private hospitals between January 2019 and January 2020 in Sana’a. Patients’ demographic and clinical information were assessed using an interviewer-administered, pretested, structured questionnaire. Wound swabs and aspirates were collected, placed in Stuart transport media and transferred to the Bacteriology Department of the National Center for Public Health Laboratories in Sana’a for bacterial isolation, identification and antimicrobial susceptibility testing..
Results: The mean age of postoperative patients was 34.0±18.3 (SD) years, age group 25-34 years was 93 (30.1%), and females were 105 (33.8%). Total 309 postoperative patients, 98 (31.7%) were presented with SSI. Having postoperative antibiotics (OR=7.0, 95%CI: 4.1-12.0), dirty surgical wound (OR=10.5, 95%CI: 5.0-21.9), emergency surgery (OR=3.1, 95%CI: 1.8-5.1), amputation (OR=2.5, 95%CI: 1.1-5.7), excision (OR=2.2, 95%CI: 1.2-4.0), hospital stay > two weeks (OR=5.2, 95%CI: 2.3-11.1) and having diabetes mellitus (OR=2.2, 95%CI: 1.1-4.7) were factors significantly associated with SSIs.
Conclusion: This study shows a significant proportion of SSIs among patients in Sana’a, Yemen. Being a female, having a dirty surgical wound, amputation, excision, long hospital stays, diabetes mellitus, and emergency surgery appears to be the major factors associated with SSIs. The most common SSI bacterial etiology is S. aureus, sensitive to vancomycin and rifampicin.
Keywords: antibiotics, associated factors, bacterial etiologies, drug resistance, post operative infections, Sana’a City, surgical site infections, Yemen.
INTRODUCTION
Surgical wound infections complicate surgical wound healing and are commonly detected. Most infections appear in the first 30 days after surgery. Surgical wounds can become infected with bacteria, in spite of whether the bacteria are previously on the patient's skin or if the bacteria are spread over the patient through contact with infected individuals or from the hospital environment. Wound infections can be external (skin), deep (muscle and tissue), or extend to the organ or location where the surgery take place1. Recent studies have demonstrated that postoperative infection can occur several years after surgery, and these infection rates are not registered as a result of loss of patient follow-up, difficulty in accessing a history of prior surgery, visiting a new surgeon, be deficient in requirements from national records and other reasons 2,3,4. SSIs classified by CDC into three types: superficial infections, deep wound infections, and infections concerning organs or body spaces. The grade of contamination of the surgical site at the time of surgery influences the possibility of an SSI. Based on the occurrence and level of contamination; wounds are classified such as clean, contaminated, dirty or infected 5. SSI epidemiological studies are problematic due to the various nature of this surgical infection. Prevalence varies greatly between surgeries, hospitals, patients, and surgeons6.The SSI may be varied by either internal or external microorganisms. Most SSIs are caused by endogenous bacteria that exist on the skin of the patient when the incision of the surgical is made. Gram-positive bacteria, for example, Staphylococcus aureus are the most common causative skin-dwelling bacteria. SSIs are likely to be caused by microorganisms inside the patient's body that are exposed in the course of the surgery. Pathogens depend on the site of the surgery; for instance, the risk of developing SSI from Gram-negative intestinal microorganisms increases with surgery in the gastrointestinal tract7. Considering risk factors of contracting SSI, numerous associated factors have been acknowledged in the research text on the contrary studies are not reproducible. Regardless of this fact, a variety of authors have frequently recognized that advanced age, male sex, and considerable blood loss were risk factors of SSI8-11. Additional risk factors for SSI are usually divided into procedure related (peri-operative), patient-related (preoperative) and postoperative categories. In general, patient-related risk factors for developing SSI can be classified as either modifiable or non-modifiable. Variable patient-related risk factors include poor diabetes control, use of immunosuppressive medications, obesity, tobacco use and duration of preoperative hospitalization. Risk factors associated with the procedure include wound category, shaving of hair in the operation site, hypoxia, length of surgery and hypothermia. Not modifiable or modifiable, such as age and gender12. Although previous research was conducted on bacterial features, antibiotic sensitivity and risk factors for urinary tract infection in postoperative patients in specialized hospitals in Sana’a, Yemen13, there is no information regarding SSI in Yemen. Therefore, this study aimed to determine the prevalence and distribution of bacterial pathogens isolated of SSI associated with postoperative wounds and their antimicrobial susceptibility profiles in selected hospitals in Sana'a City, Yemen.
SUBJECTS AND METHODS
Study Area and Period
The study was conducted in several public hospitals in Sana’a city the capital of Yemen. In the region, there are 4 public hospitals, one Police hospital, one army hospital, several 12 private general hospitals. Currently, these hospitals provide health-care services to more than 5 million people in Sana’a and around Sana’a neighboring regions. The hospitals were selected based on provision of major surgical service in the Sana’a city.
Study Design and Population
A cross-sectional study was conducted among 309 postoperative patients who underwent elective or emergency surgical procedure between January 2019 and January 2020 at selected hospitals in Sana’a.
Sample Size Determination and Sampling Technique
The minimum sample size of 309 was estimated using the singular population ratio formula with the assumption of an SSI prevalence of 75.0% from a previous studies in Ethiopia14,15, a 4.83% margin of error, a standard normal deviate of 1.96 at 95% confidence level, and a non-response rate of 10%. The patients who met the inclusion criteria and consent to participate were consecutively recruited into the study.
Data Collection Methods
Patients physical examination were carried out by a rained master’s student of medical microbiology for presence of SSIs based on one or more of the following criteria: pain, tenderness, localized swelling, redness, heat or purulent discharge, evidence of an abscess or fever >38oC in deep incisions.
Sample collection:
Wound swab or aspirates were collected aseptically from the surgical sites of the patients who came for medical checkup. This was carried out before the wound is treated with antiseptic solution. The samples were then placed in 5ml Stuart transport media and transferred to the Bacteriology Department of the National Center for Public Health Laboratories for bacteriological examination.
Bacterial Isolation and Identification
Test procedures were performed on the samples following standard bacteriological techniques for swabs and aspirates16.
The samples were inoculated into blood agar, Mannitol salt agar, and MacConkey agar (Oxoid) using standard streak plate technique. The plates were incubated in an anaerobic atmosphere at 37°C for 24-48h. Bacterial growth on media was confirmed based on their colony shape, pigment production; blood hemolysis as beta hemolysis, alpha hemolysis, gamma hemolysis; tests of biochemical as fermentation of lactose, mannitol, glucose, sucrose; and testing of motility properties.
Bacteria grown on both blood agar and mannitol salt agar are suspected to be Gram-positive bacteria for the reason that mannitol salt agar is a selective medium for Staphylococcus. Subsequently, a catalase test was performed to distinguish streptococcus from staphylococci, where catalase negative results excluded streptococcal species. Moreover, a coagulase enzyme test was carried out to distinguish S. aureus from other species of the Staphylococcus genus, where they are negative for coagulase.
Bacteria grown on MacConkey agar and blood agar are suspected to be Gram-negative bacteria because MacConkey agar is Gram-negative bacteria selective media. Colonies on MacConkey agar were characterized based on their character of lactose fermentation. The pink color characters the lactose fermenters while the colorless colonies were the lactose-non-fermenters.
Gram-negative bacteria were further tested for their motility and characterized using arrays of biochemical tests including indole, urea, Triple Sugar Iron agar (TSI), Simmon’s Citrate agar, and Lysine Decarboxylase (LDC). Colonies that produced pigment on blood agar and non-lactose fermenter on MacConkey agar were tested using oxidase to confirm P. aeruginosa, which is oxidase-positive bacterium.
Gram-negative bacteria were also investigated for their motility and differentiate using combinations of biochemical assays including triglyceride iron agar (TSI), indole, urea, Simmon’s Citrate agar and Lysine Decarboxylase (LDC). Colonies that formed dye on blood agar and non-lactose fermented on MacConkey agar were tested with oxidase to confirm P. aeruginosa (oxidase-positive bacteria).
Antimicrobial Susceptibility Testing
The antimicrobial susceptibility patterns of the isolates were tested with the Kirby-Bauer diffusion technique using Mueller-Hilton agar (Oxoid). Four to five bacterial colonies of the same morphology were selected and suspending in 5ml nutrient broth. The turbidity of the suspension was then adjusted to 0.5 McFarland to obtain a colony count of approximately 107 or 108 colony-forming units per milliliter. A sterile swab was then inserted into the suspension, removed the excess by pressing it against the sides of the tube, inoculated directly at the center of the Mueller-Hilton agar plate and then spread evenly to obtain confluent growth. To test for streptococci susceptibility, 5% defibrinated sterile blood was aseptically added to the Mueller-Hilton agar16. After the inoculated plates were left to dry for 3-5 minutes, the appropriate antimicrobial susceptibility discs were aseptically placed and pressed gently against the medium for total surface contact using a sterile forceps. To avoid the area of inhibition from overlapping, the discs were spaced equally at a distance of approximately 24 mm from each other and 15 mm from the edge of the plate. The plates were incubated aerobically in the incubator at 37oC for 18-24 hours17. The diameter of the zone of inhibition for each antibiotic was measured to the nearest millimeter using digital caliper, (Market lab, UK). The diameter of the inhibition zone of tested bacteria around the disc was measured to the nearest millimeter, and then classified as sensitive and resistant according to Cheesbrough16 and the Clinical Laboratory Standard Institute guidelines of 2015 17.
The antimicrobial susceptibility discs (Oxoid, Ltd, UK) includes; Amikacin (30μg), Clarithromycin (30μg), Amoxicillin-clavulanic acid (30μg), Ampicillin (10ʋg) Penicillin (30μg), Erythromycin (15μg), Ceftriaxone (30μg), Cefixime (30μg), Ceftazidime (30μg), Cefotaxime (30μg), Cefepime (30μg), Gentamicin (10μg), Ciprofloxacin (5μg), Norfloxacin (10μg), and Cotrimoxazole (25μg) Imipenem (30μg), Aztreonam (30μg), Rifampicin (30μg), and Vancomycin (30μg).
Data analysis
The data were analyzed with Epi Info version 6 (CDC, Atlanta, USA). The continuous variable (age) was summarized with mean and standard deviation while the categorical variables were summarized with frequencies and proportions and presented as tables. Bivariate analysis was conducted to determine association between the dependent variable (SSIs) and the independent variables (demographic and clinical information) with a 95% confidence level.
Ethical Consideration: Ethical approval for this study, No: 12 dated December 1, 2018 was obtained from the Medical Ethics and Research Committee of the Faculty of Medicine and Health Sciences, Sana’a University. All procedures were according to the ethical guidelines of the review committee. Also, from all participants, consents were taken and participants were informed that participation is voluntary and that they can reject this exclusive of stating any reason.
RESULTS
Of 309 postoperative patients with mean age of 34.0±18.3 (SD) years, 93 (30.1%) were of the age group 25-34 years, while females were 105 (33.8%). The prevalence of SSIs was 31.7%, Table 1. The odds of SSIs among females (39.1%), with an odds ratio (OR) of 1.6, 95%CI: 1.1-2.7) was higher than the males (27.9%). Also, presence of drainage at the operation site (OR=3.6, 95%CI=2.1-6.2), having post-operative antibiotics (OR=7.0, 95%CI: 4.1-12.0), dirty surgical wound (OR=10.5, 95%CI: 5.0-21.9), emergency surgery (OR=3.1, 95%CI: 1.8-5.1), amputation (OR= 2.5, 95%CI: 1.1-5.7), excision (OR=2.2, 95%CI: 1.2-4.0), hospital stay > two weeks (OR=5.2, 95%CI: 2.3-11.1), being underweight (OR=1.9, 95% CI=1.1-3.5 and having diabetes mellitus (OR=2.2, 95%CI: 1.1-4.7) were factors significantly associated with SSIs, Table 2.
The most common Gram-negative bacteria isolated (57.1%) were E. coli (34.7%), Klebsiella spp. (11.2%) and P. aeruginosa (11.2%) Table 3. Double microbial infections constituted 26.5% of the bacterial infections, Table 3. Among the Gram-positive bacteria isolated (42.9%), S. aureus 48 (37.8%) and the coagulase negative Staphylococci 5 (5.1%) were the most resistant (100%) to penicillin, Table 5.
DISCUSSION
This study assessed the prevalence of SSIs, associated factors and antimicrobial susceptibility patterns of the bacterial isolates among postoperative patients in Sana’a. The prevalence of SSIs in this study was similar to the 24.6% reported in Hawassa20 and the 29.8% observed in Mekele15, all in Ethiopia. However, this finding was dissimilar from previous studies in Ethiopia14,10 Rwanda18, and Uganda19. Also, the SSI occurrence in this study was lower than the 67.6% reported by Zahran and colleagues in Egypt11, but is higher than the 2.5% presented by Ramirez and coworkers from 13,000 surgeries performed in three cities in Peru21 and the 2.2% from a meta-analysis in Saudi Arabia22. This difference may be linked to difference in hygienic practices and environments as improper wound care after surgery, failure to maintain sterility during surgical procedures, lack of portable water, overcrowding and inadequate infection control measures are known risk factors for SSIs. The high prevalence of SSIs reported in this study may be attributed to the absence of modern surgical techniques, well-equipped operation rooms, and inadequately trained healthcare professionals in Yemen compared to middle and high-income countries. In this study, being female was significantly associated with SSI. It is different from the studies: by Deribe et al.,20 in Hawassa, Ethiopia, by Shakir et al., in Ethiopia in the Harare region14, and by Zahran et al., In Egypt 11, the prevalence of SSI was nearly the same in both sexes. In the current study, there was no significant association between any age group with SSI. It is different from the study by Deribe et al.,14 in Hawassa, Ethiopia and Shakir et al.,20 in Ethiopia in the Harare region, where the prevalence of SSI was found to be higher in the older age groups.
On the contrary, a study by Asres et al., in Addis Ababa in Ethiopia contradicts this finding as infection was mostly observed in the <10 year age group8. In this regard, the prevalence of SSI has varied between age group in previous studies, and may be related to participants' immune status as well14. In this study, the prevalence of SSI was higher in patients who had discharge at the operating site than in those who did not. This result is in line with the report of Shakir et al., in Ethiopia14 and Zahran et al., in Egypt11. One possible explanation is that it is one of the physical diagnostic criteria for SSIs without the need for laboratory testing. The current study found that the prevalence of SSI was higher in patients with the dirty wound type than in patients with clean wounds. This result is consistent with the reports of Shaker et al.,14, Lubega et al.,19 by Deribe et al.,20 and Mengesha et al.,15.
The significant effect of internal contamination during the operation or external contamination during the wound care procedure may be scientifically justified. According to this study, being diabetic was associated with a higher risk of SSI, compared to non-diabetics. This may be because deficiency of vasoactive neuropeptides in patients with neuropathy might impair normal soft tissues resulting in delayed wound healing in diabetic patients. In the current study also, the presence of antibiotics after surgery, was a factor significantly associated with anti-SSI. This is similar to studies conducted previously in Ethiopia8,14,23 and in Egypt11. Emergency surgery was a factor significantly associated with SSIs in the current study. This is similar to the study by Makdad et al.,13 where emergency surgery has been independently associated with postoperative infection. Regarding postoperative patients in other surgical specialties, the investigation reveals that the appreciable postoperative incidence is not limited to the type of surgeries24. This study revealed that 57.1% of the isolates are Gram-negative bacteria, which is in agreement with the previous study from Ethiopia14,25,26, while the study conducted in Egypt11 contradicts this result where Gram-positive bacteria were more dominant. This difference may be attributed to the habitats of the bacterial aetiology and infection prevention practices in different healthcare settings. This research indicates that the most frequently isolated species was S. aureus (37.8%). The finding is in line with studies done in Ethiopia (33.3%)8, and (26.2%) 10 whereas the study conducted in Uganda revealed that of the most prevalent isolate was K. pneumonia with a 50% rate19. This difference in the distribution of bacterial species might be due to variation in common hospital-acquired pathogens, and infection prevention and control policies and guidelines across countries.
In this study, Ciprofloxacin, Cefotaxime, Cefepime, Gentamicin and Imipenem were relatively effective drugs in treating SSIs caused by Gram-negative bacteria which is consistent with a previously reported study in Yemen by Al-Makdad et al.,13 and in Ethiopia by Gelaw et al.,27. On the contrary, the study by Al-Shami et al. reported reduced efficacy of these drugs (33%, 51%, 12%, and 10%, respectively)28. Perhaps the rise in antibiotic resistance due to irrational use of anti-infective drugs combined with inadequate measures to control the spread of infections, variation in common hospital-acquired pathogens, and acquisition of antimicrobial-resistant organisms is then related to hosting risk factors as well as to the amount of time spent in an environment where they are exposed to these microorganisms. The current study also indicated that Aztreonam, Augmentin, Gentamicin, Ciprofloxa-cin, and Cefotaxime were effective drugs for SSI inhibitors caused by Gram-positive organisms in more than 80% of isolates and were almost similar to those reported previously in Yemen13,29-42. The present study confirms the alarming rate of resistance of Gram-positive bacteria to the polyclonal antimicrobials penicillin (100%), erythromycin (85.8%) and amoxici-llin (78.6%) which was similar compared to previous studies conducted in Yemen before29-42. This may be because the experimental treatment of isolates and/or the random and repeated use of these antibiotics by unskilled practitioners along with the lack of guidelines for antibiotic use participate a fundamental role in the emergence and spread of resistance13,28,41.
Limitations
This study did not address anaerobic bacteria pathogens due to limited laboratory facilities. The study of the cross section made it difficult to establish causation (the chronology of cause and effects could not be explored).
CONCLUSION
This study shows a significant proportion of SSIs among post-operative patients in Sana’a, Yemen. Being a female, having dirty surgical wound, amputation, excision, long hospital stays, diabetes mellitus, and emergency surgery appears to be the major factors associated with SSIs. The most common bacterial etiology is S. aureus and sensitive to vancomycin and rifampicin. Since the clinical benefits of these risk factors are unproven, further research such as prospective cohort study should be conducted to operative management in Yemen.
ACKNOWLEDGMENT
The authors would like to acknowledge Sana’a University, Sana’a, Yemen which supported this work.
CONFLICT OF INTEREST
No conflict of interest associated with this work.
REFERENCES